NGS Targeted Hotspot Panel 16 Kit

 

Product Name/Description
No. of Samples
Product Code
NGS Targeted Hotspot Panel 16 Kit   (For Illumina® Platforms)
Up to 40
THP16-ILNGS

 

NGS Targeted Hotspot Panel 16 Kit: a comprehensive 16 gene pan-cancer assay.

EntroGen NGS Targeted Hotspot Panel 16 Kit is a comprehensive 16 gene pan-cancer assay designed to detect and amplify clinically relevant hotspot mutations in solid tumors.  Utilizing a robust next-generation sequencing (NGS) platform, labs are able to simultaneously analyze several different tumor types by batching up to 12 samples on a single run*.

NGS Targeted Hotspot Panel 16 Kit (THP16) is compatible with fresh frozen, and formalin fixed paraffin embedded (FFPE) samples. This assay features high sensitivity and throughput detecting clinically relevant hotspot variants down to 5% with minimal DNA input.  With its comprehensive, streamlined workflow, THP16 is designed to be seamlessly integrated into any lab.  Laboratories with specific challenges, such as low disease specific sample volumes, are able to batch various sample types together and accelerate tumor profiling.

 

 

GENE DISEASE COVERAGE
BRAF Melanoma, Colorectal, Lung Exons 11 & 15
EGFR Lung, Glioma Exons 3, 7, 12, 15, 18, 19, 20, 21
ERBB2 Breast, Lung Exons 8, 14, 17, 18, 19, 20, 21, 24, 26
HRAS Thyroid Exons 2, 3
C-KIT GIST, Melanoma Exons 2, 8, 9, 10, 11, 13, 14, 15, 17, 18
IDH1 Glioma, AML Exon 2
IDH2 Glioma, AML Exon 4
JAK2 Bone Marrow Disorders Exon 12, 14
KRAS Colorectal, Lung Exons 2, 3, 4
MET Lung Exons 2, 11, 14, 16, 18, 19, 20
NRAS Colorectal, Melanoma Exons 2, 3, 4
PDGFRA GIST Exons 12, 14, 15, 18
PIK3CA Colorectal, Breast, Ovarian Exons 1, 4, 6, 7, 9, 13,18, 20
RET Thyroid Exons 10, 11, 13, 15, 16
TERT CNS, Bladder,  Thyroid, Skin Promoter
TP53 Breast, Ovarian, Skin, Lung, Colorectal Entire Exome

 

From DNA to results in approximately 24 hours with 4 hours of hands-on time including sample and library QC.

Reagents for target enrichment, library preparation for Illumina® and clean-up are included, as well as a local user-friendly software designed to reduce the bioinformatics burden on the end-user by calling clinically relevant mutations directly from VCF files. Sample and library quality control assays (DNA Fragmentation Quantification assay, Library Quantification Kit for Illumina®) are available upon request to ensure high quality data without the need for repeat sequencing.

Equipment & Materials:

NGS Targeted Hotspot Panel 16 Kit requires the following equipment:

  • Illumina MiniSeq (validated instrument). Illumina MiSeq or NextSeq 500 are also compatible.
  • PCR thermocycler.
  • Real-time PCR machine (for sample and library QC assays).
  • Magnetic rack (for amplicon and library clean-up).

The kit includes reagents for:

  • Target enrichment.
  • Library preparation (indexes and adaptor-oligos for Illumina sequencing).
  • Amplicon and library clean-up (magnetic beads are included).

The reagents in the kit are to prepare sequencing libraries for up to 40 samples.

 

 

Intended Use:

USA: NGS Targeted Hotspot Panel 16 Kit is provided for research use only (RUO). Not for use in diagnostic procedures.

Europe: NGS Targeted Hotspot Panel 16 Kit is provided for research use (RUO). Not for use in diagnostic procedures.

 

Overview

  • Covers and detects all clinically relevant hotspot mutations in 16 genes from fresh frozen and FFPE tissue samples.
  • Detect down to 5% allele frequency from 12 ng of input DNA.
  • Includes reagents for target enrichment; library preparation and clean up; and DNA and library QC.
  • Library preparation reagents are compatible with Illumina® NextSeq 500, MiniSeq, and MiSeq sequencers.
  • Complimentary user-friendly software for local data analysis.

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